Introduction: installing and citing Haplin2 years ago
Citing use of Haplin | Obtaining and installing Haplin | Requirements | Installation
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Relative efficiency in Haplin2 years ago
Background | Regular autosomal effects | Parent-of-origin (PoO) effects | Maternal effects | Haplotype effects | Analysis of X-linked markers
Reading and preparing the data6 years ago
Reading the data into Haplin | Reading covariate data | Accessing the information in the loaded data | Displaying and extracting phenotype information | Displaying and extracting genotype information | Preparing your data | Choosing a subset of data | Useful shortcut functions | Re-using the data
Running Haplin analysis6 years ago
Running the analysis | Exemplary Haplin runs | Trial run no.1 | Trial run no.2 | Running analysis on GWAS data: HaplinSlide | Investigating and plotting results | Special effects: maternal or parent-of-origin | Analysis of gene-environment interactions (GxE) with haplinStrat | Plotting the results | Checking for significance of interactions
Running Haplin on cluster6 years ago
General about running analysis on a cluster | Extra requirements | Job submission | Running parallel Haplin analysis on a cluster
